Scaffold Ga0335000_0001541

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0001541
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19646
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (30.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004451	Metagenome / Metatranscriptome	437	N
F006111	Metagenome / Metatranscriptome	381	N
F018483	Metagenome / Metatranscriptome	235	N
F023108	Metagenome	211	Y
F046370	Metagenome	151	Y
F052290	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0001541_11371_11814	F006111	N/A	MISYQSIVDKITTFYDNHLQVKKVGSDFKEQMVNFATKDEKYPLVYVVPTGVTPYENVTIFNLELYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNLSVVIKSWTNCQIPEQYS
Ga0335000_0001541_11831_12235	F052290	N/A	MAYNIKYPMRRKMATVLRRVLRANFLVDTGTLVDSVRINAEISDRFNLRIQIVAAYYFGFLNNGTQTIGAYNLLRQFDAALDADGIYAEIWGEYTEYLTTKYPILEIDNILERGGDILFSFEPLFGEFYGELDY
Ga0335000_0001541_1592_1729	F018483	AGGA	MCQAVEAYIYSKKEVAIKINRIAIISDSRQMEMLAYAYAYANGDR
Ga0335000_0001541_19346_19645	F023108	N/A	MKYLAIILLLSSCSAQYHLNKAIKKGYSCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVQKAQ
Ga0335000_0001541_313_840	F004451	AGGA	MRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFIYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLWDKIREDMQYQNNMAVIETYRGRITDRIKLIVFQCYFDKGYSTARAMAEYFRIPVTSAHYWIQEIKTDLKQLRDEN
Ga0335000_0001541_5130_6527	F046370	AGGAG	MPATTIIAQPSVMMPAYNPIKYIIDNAYKNEPGFRYVFTVYPATNATPIAQYKTLPVFGTGYGEQDISKLMQSLVTWKFAAGQVNESWYQYDIRFGYEYTANIVYINSLVQSAGGDVEIQYNAHGFVAGDQISITQAFGGIAANPTVEGLHTVIFASTNLFVINARWDTVTDATINGTVTYADLRKTILIDDEGLSQLEVFNGAYSLGIYAQGAFPYIDYYGALDPSFALTSLTNPNDSFAVAASITDNIFYLMCRVYSGVEYILQYYDIQGNAIGQDSPYNPTDGLYNFPVDTATHSITEDFFIGIKANDFAGTEFKYFFNYDGRCAINEDILYYLDRMGSWQSFNFQLKTYEKGQISREMYNQHVDGQVVDGEWLYSSDAMGNRTLNTNVSNTLDLNTNWMDQYNADRFQELLTSPQVLYYNGTDYRACTIDATSFENFRQRNKNLIKQSVTIKLALNTPING