Scaffold Ga0335000_0001399

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0001399
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20535
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F058109	Metagenome	135	Y
F081027	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0001399_4065_4205	F081027	N/A	MSKQVLISLLAQGNTGAEILQILDTLGSEQSSEGAYNEPTADMIEF
Ga0335000_0001399_414_554	F058109	GGA	MIETDFFILTHDQYHQFNSEATELGVSVDYFLSEFCTVEGEWVDVE
Ga0335000_0001399_586_873	F005089	N/A	MNTNDLLDSIKLSEQIALEHYQQLNGFVDYRLPGVCNHYFAKYDLNGTRDGEICLTCKVSKTVKGSLRYTFQINGKRIAYKEIWTKFNLLGAFRN