Scaffold Ga0335000_0000672

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0000672
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29424
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F036299	Metagenome	170	N
F043476	Metagenome	156	N
F063621	Metagenome	129	N
F090574	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0000672_10392_10742	F036299	GGA	VIRTSAIVHTDRQVVTAGSLTELTLPDLCDSAGLIRRFALRDSAKTSVLSVANSGSGIVIRLRRDTVVERLILRDTTIVERTVVVEPKKRKSRWPILLIGAILGLLASVVLFARLK
Ga0335000_0000672_27006_28190	F063621	N/A	MSITIISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAYSPSAYIAATVSGDTPAIKVFSNRPVTSTLGSGDSDFIGVLSNVSGIALRVSYDGGTPRAAFLVTGSVSAISNIINAGPYGVYNLTSSQCSDGNAGSVNFPTDGGKIAVLVTFNTAGTNTSAFSRTAAYTYVIDNCQRYSDLRVFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYSPECWIQIGTQLVPIVVQTNTYNVRKRVVDKLQQISVDVQVGYENTAL
Ga0335000_0000672_28918_29424	F033771	N/A	IYTASDKKIGVIAVLDGIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRHAKVAGKWYQFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMTMGDVWGYAAFFLQLSEPLLTIMRKSLTEQGTTTTTAKA
Ga0335000_0000672_7287_7541	F090574	N/A	MSLEERVEAMVSLSHNNMQLGKVVTLVGQLFQNVSPEVSARLYPIWAEAYRSALQDMQNAYNLGVTEERTKCIAMMSKLKTTNQ
Ga0335000_0000672_7538_7972	F043476	AGGAGG	VLTLPTNIDKAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALESIIERTEDLAKDTAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR