Scaffold Ga0335000_0000507

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0000507
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33588
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012965	Metagenome / Metatranscriptome	275	Y
F021975	Metagenome	216	Y
F025995	Metagenome	199	Y
F047988	Metagenome	149	Y
F073497	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0000507_13070_13567	F047988	N/A	MSEDDLKQLSEFQEPIVLENPDTSPNAVLEVLPPVLREIPQTRHHVKDEQLGLQIRDMAKLGLGKQNVALAARVSVYILEKYYLDEFLEGQADMQRGLAAKAVSEAMEGNTAILLHLLKTKLGWSEHQTLEISGEIRNVVSSRPLTKEEFIQRYLTQNGEDGSGE
Ga0335000_0000507_20568_20885	F021975	GGA	MKYKLFQYCHKQQKVVPIEEVHREYQSHARDLFIQDEMEPTRNPLNPKEIYTSKSKLRAAYRAAGAIEVGDAYDRGYTPERESGATERRLVQNIKAKMIERYRNG
Ga0335000_0000507_23473_23778	F073497	AGGA	MASATTLIGLGMPAELASAVSDGVNSNVVNATAAGVRTKQAINNVNDTTPTAAELTTSFGAPATVGSGFVGVVKDADADTNCFVVVSNGTSYFYLKFTKAV
Ga0335000_0000507_25545_26402	F012965	AGGA	MTIATVIQNVANEAGYTVESNVLASTEVTTKQLLAIANRINRDIFEAYPWPKCYASGSITLVNGQATYALPAAFSYYHYETFWNQSTRWRVLGPMTEQEYAEIQGFGLNTAVYQRFQIRGITNSELLISPTPGASGDIIIFEYIADRSVRPVTWTASTAFAANSYCFYNGNYYQTTAGGTTGATAPTHTSGSVSDGGVTWTYYNGAYNEFLANTDRSIFQEKLLEQGVLERFAEIHGLDSIRPRFDVQLNEEFSRDQNGKVLYAGGHMRDPMFARNGVAVFGTWI
Ga0335000_0000507_2878_3066	F025995	GGAG	MPIILSIVRHLLTLAAGGLLTFGIEERDAANLVHAAEPVVAGAVLYGVSQAWSLVDKKKRPK