Basic Information | |
---|---|
Taxon OID | 3300034063 Open in IMG/M |
Scaffold ID | Ga0335000_0000117 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 62070 |
Total Scaffold Genes | 89 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 72 (80.90%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002130 | Metagenome / Metatranscriptome | 591 | Y |
F065707 | Metagenome / Metatranscriptome | 127 | Y |
F075874 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335000_0000117_11296_11466 | F075874 | GGAG | MTKRITIPVSTDIDKIRDRLERDTGVRMTYTQVFNFLVHFYVQRASEPKSRWRSLE |
Ga0335000_0000117_13049_13297 | F065707 | AGGAG | MRPAEFSTENPPRPIDCLETKEYIAGLRRRIEVQQDGMEHLANQVHQLRVQKRRLEEQIERLALDLGIKDGHTGPGWEEVPK |
Ga0335000_0000117_43630_44244 | F002130 | N/A | MTEKLNANTTLDKVLGYVDSPFKLFAVILMAVFAFAGYALYESQEFIRDAYKESQKLPEIRTDRADDAATMLFKQTGATVVAVFKVNPLFNSRTLYRAYTKDGRDKTIEDIDVGLFTHNSSNNADVVKLMTNEIPCGEYRYAQSEVGLWYLEKGVTYTCRVSVPPDSHRFVGQVTVGWAAQPANLEQTKFMLEIASAMLTKRGG |
⦗Top⦘ |