Scaffold Ga0335000_0000117

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0000117
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62070
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (80.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002130	Metagenome / Metatranscriptome	591	Y
F065707	Metagenome / Metatranscriptome	127	Y
F075874	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0000117_11296_11466	F075874	GGAG	MTKRITIPVSTDIDKIRDRLERDTGVRMTYTQVFNFLVHFYVQRASEPKSRWRSLE
Ga0335000_0000117_13049_13297	F065707	AGGAG	MRPAEFSTENPPRPIDCLETKEYIAGLRRRIEVQQDGMEHLANQVHQLRVQKRRLEEQIERLALDLGIKDGHTGPGWEEVPK
Ga0335000_0000117_43630_44244	F002130	N/A	MTEKLNANTTLDKVLGYVDSPFKLFAVILMAVFAFAGYALYESQEFIRDAYKESQKLPEIRTDRADDAATMLFKQTGATVVAVFKVNPLFNSRTLYRAYTKDGRDKTIEDIDVGLFTHNSSNNADVVKLMTNEIPCGEYRYAQSEVGLWYLEKGVTYTCRVSVPPDSHRFVGQVTVGWAAQPANLEQTKFMLEIASAMLTKRGG