Scaffold Ga0335000_0000013

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0000013
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134133
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 133 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064189	Metagenome	129	Y
F085623	Metagenome / Metatranscriptome	111	Y
F104075	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0000013_1096_1308	F064189	AGGA	MAKNFKDLISADSKTMTREQAMIYIINFFNSRMMTTSVKHVSKAKELIGLHEISVSELVNKYVELVYENS
Ga0335000_0000013_15027_15215	F085623	AGG	MTLFRTIVLEYDLIEIHYNKRLKNKPYLVRVFSYNNSDPHELRIDSSELKDLYKILKQHKFL
Ga0335000_0000013_9956_10288	F104075	GGAGG	MKIANKKRKQVSVEFLEHIKNTVNDMLSTRIPQSTKQKLCILAEKMLMETKSYEGFKYLYWSRFGCLDWEEAKQKGVYKHVPQEYILGPDATDSPDFISDIQGEYSRRYT