Scaffold Ga0334995_0397168

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0397168
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001834	Metagenome / Metatranscriptome	628	Y
F002687	Metagenome / Metatranscriptome	536	Y
F062578	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0397168_345_731	F001834	N/A	MPSTILSSIRTPLATALAGVAGNVYAFVPESPIPPCVVLVPDSPYLELETINKSTIHTKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPAGYIVSSVERPTVQQVGASTLLIADVRVSTYYTQTA
Ga0334995_0397168_40_345	F002687	GGA	LADNLGQYTFSASITNADILEANVIPSGVATLSSASTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFSPTPFRMGRSLFNKCVGLLGSYMDTDSLAQ
Ga0334995_0397168_741_863	F062578	AGGAG	MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQT