Scaffold Ga0334995_0296330

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0296330
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1062
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010151	Metagenome / Metatranscriptome	307	Y
F070994	Metagenome	122	Y
F075680	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0296330_2_253	F010151	N/A	ATIKEPKTTTVPTSPGACAIVVFGAISRITKDTISPFMDYLSRFDAEWQAVFAINIAKNPAKQSIAFSSSAFKDWVVKNQDLL
Ga0334995_0296330_257_484	F070994	N/A	MLGMNGMTATDFKRYIVRWVIDHLKNESGTAQIQVLGYCVYDTKECKTLFEHKDKQVCEKVLTMVLEGVDHGIQK
Ga0334995_0296330_468_842	F075680	AGGAG	MGYRSDVVAVFYTQDPNEFPSIKLFIDENIPEWCRGDEFMSTFVGNHDIRGIKFTMSDVKWYPSYPDVKGFEDALDKFEKLSDGGDKWMWEFVRIGEETQDVEERWGDHSHNLLHVSRTIESDV