NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0219464

Scaffold Ga0334995_0219464


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0219464 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1306
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F028151Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0219464_568_1230F002357AGGAGMAFNLEDYEDVATLNKWFISNYPMGRSDLSVVSFDAEKGYILIQATLWRDSKDAAPAVSNLAFGSRETYIPNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMRKVETNPSFKEKLEARQNMYGKPGSKSSQIETILRDSFEADKKPEPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE
Ga0334995_0219464_70_282F028151GGAMNAWLEARDMGFVIMWAIVGLTFAAWIIYEIRDTAFQNGYWRGRAHGWDSHRRLMNTKFKSDEVFDYDKN
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