NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0195266

Scaffold Ga0334995_0195266


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0195266 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002300Metagenome / Metatranscriptome573Y
F050160Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0195266_3_356F050160N/AVKSKENLKTMTKIDEAKIIARDDEVKAIGKTAEEFRASIEKQIDRGIETKALITLPHPSATISYIPILTFTSFICIFSILNSFVADPLDHHFQTFTIGDLSDCKLRHLSRQTASIQAD
Ga0334995_0195266_451_1365F002300GGAMATVYSTRSCIPKLCCSLAAVGLFIAGILITGAYPHSNLHDLDFNQTQKESNLTSPGNLTLAAKTLAFIQATNKEIHDQADKALERIERSMRRIPELAEKMSRSTRAVKLSQALHRAAAIFGNYKPKPEYQLSEYATGKRQRWRRNIGSRTNDSPTASATPKTETAAEWFLQNLASSLFPFTGFTSIGAALHLATGLRRSKRAPSVYPFEITDLLDYEARKKHSQNKILGEKIAKILHQNTDFADEIAANNQTPSEKLKKDPIMALVTKTVSTYMLVKHSKNAKELYNKENLSPWGEPFFKKKE
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