Scaffold Ga0334995_0165037

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0165037
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1582
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0165037_1073_1270	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAALEKHLKAIDRLLLDVLMGDIDPMQAMINRQKIKDEYEQP
Ga0334995_0165037_562_807	F031377	AGG	MITNAHEFTSVSSTNGRVTPFNTGKVQIGLMYQPKPPEMTSSEELVQAALMGWSSIHRPVPLWPVTLGSLIVGILIILTVG
Ga0334995_0165037_811_1080	F028744	N/A	MHEFLYECDELGLALKCFFEYEPAEVGSVEPLSGLKLEPDYPEVWTLISVFLPNSQVDLSGVLHPDVIFRIEQDAPIYFEEMRRETSYD