Scaffold Ga0334995_0162810

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0162810
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F002302	Metagenome	573	Y
F103231	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0162810_1_132	F103231	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTQPL
Ga0334995_0162810_636_998	F002302	N/A	MSYTDLFNEAIDDVTATLTAVTGLRVINDATKLVANSVYLDAPNFITFAGNGNIVRLEFPVKVIGSGPAGLPVLRQILSIVATVLGSKIIVMGGRPSSLEIGGALYPCYDLDCAIQAQTS
Ga0334995_0162810_998_1594	F001326	N/A	DNFAVLQLLTPSEIAVGQSITVAGVDATFNGTYSVRALPQYLFIGVDTEGDLLYDYQMPVADQVLYAKVANNVERTAASGTVSYDPVCTWVTAAQVATYLGINIPNPSDDYTLLTQSVSAGNQFAYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGTAPQQSLTPIVKQLLGIPRPAVA