Scaffold Ga0334995_0132503

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0132503
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1827
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F007223	Metagenome	355	Y
F031078	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0132503_124_288	F007223	GAGG	MHKLFDPSFGDMVVMIVLSGLYFHLGRIVGMRVGYLKGRKAVREYYTSKERVKV
Ga0334995_0132503_1550_1699	F000706	GGAG	MNTTDFITLYFASLAVIGGLAGYVITHLLSEIKRLNSRVDEIYNILLDR
Ga0334995_0132503_1696_1827	F031078	N/A	YATLGLIAIPVLRTAIKSYRAKKAVADIVVDAIEAAVDTVEKK