NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0120739

Scaffold Ga0334995_0120739


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0120739 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1944
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016273Metagenome / Metatranscriptome248Y
F018369Metagenome235Y
F046382Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0120739_1827_1943F016273N/AISWRLQQWYENMVLDARAMQDLQNAIEMLKQLAKQVQK
Ga0334995_0120739_217_480F018369AGGMKYSYIQMTDEGKRQLMRELSRELTDKKIAELMDQFADGVKTDSNGEPYIKIDADDVLCCAVPMYTHFIDINHIEKVTANEEDGSDE
Ga0334995_0120739_36_224F046382AGGAGGMNKRNWPYGTDMSEPNWTGRTTRQMRDYKRPDSRIPPVAWVIGLIGLALVFGFFPLLSLVML

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