Scaffold Ga0334995_0087891

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0087891
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2395
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0087891_108_353	F051124	GGA	MTKKTDPIEQYLNSTGSGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKAKIAKAWMEREADFDDDE
Ga0334995_0087891_1867_2277	F033428	AGAAGG	MSPLEGRLVDESVVTILAMRFTKLDDKSRLVIRDIADEANGSISMNPPTERRIGIARILLEIAENDGHVDKDLVRSICELRTGKKYNTAGEALADLSWVDAERVWSSFQDIYNNRVQLEYNPNTNNYTIKEYSNVR
Ga0334995_0087891_417_641	F028157	AGGA	MSITDPKFATVLADSDGHSRWVAHTDATDIMSAYRQGGVHLLVTLDPEGNITVAFKPGRHWEASWSPPITLERR
Ga0334995_0087891_961_1185	F041769	AGGAG	MTYDIDALRQMNEEAQLRIAELSTALAHVTEQRDNLEDSLTAAIREVDAYKQQIASLTTTIERLRLHIAQGVEL