Scaffold Ga0334995_0086587

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0086587
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2418
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019448	Metagenome	229	Y
F050379	Metagenome	145	Y
F061549	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0086587_1175_1375	F019448	GGAG	MTAMTRTQMVNACADYEVEWFFDREPAEQREVFRHIQLHGFTGFKNYPDDNLFAVCVDKGIFLMEE
Ga0334995_0086587_1377_1670	F061549	GGAGG	MKYKVEVVMSYWQTVEVEADSSADASNKAFEQFDITKARVGEGETYDTELIDKVKYVVRNHNHTVLGVFDNEHDAEKDAQEYRYGTGNAAYVDKEEV
Ga0334995_0086587_2208_2417	F050379	AGGAG	MTSNELTDAQLQMEADDLIAKYKDEIIEQGDWWWGTDTHSYNIHCLDDECDGWYNVNVYKVDPVTGMDNY