Scaffold Ga0334995_0081100

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0081100
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2520
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003660	Metagenome / Metatranscriptome	474	Y
F011215	Metagenome / Metatranscriptome	293	Y
F038589	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0081100_1473_1595	F003660	N/A	MTHETKAKIKAAIATGYIMLTACLGLAFFGRFILALILNP
Ga0334995_0081100_1607_1828	F011215	N/A	MTLLEQMNASEYKKLLEFQEKFPTIGLDLVRALREKTLPIQLTLGECIDLSNAIGNPYGQYCNRIFDAFKSRP
Ga0334995_0081100_1843_2046	F038589	GAG	MNADEFKKLLEFKEKYPTLGEDLIKALTEKIVVIHLTVGEYVSLCDALDIYCAPALNQVFQAFKSKP