NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0071075

Scaffold Ga0334995_0071075


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0071075 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2740
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016144Metagenome / Metatranscriptome249Y
F075700Metagenome / Metatranscriptome118N
F100476Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0071075_1483_2184F100476AGAAGLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKKFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSDTVLEDVYPLFSAFIKENEFKELYEYSTQEPFNALVIDATRGKPIFKKNFDKVLHIS
Ga0334995_0071075_2_559F016144N/AYETIGQPLNTIFSSQNSLEEGQTRATAEEQINAGLRRVYNQSRYFAHNGDSIVTTKWRIGNNTFEPQNLDEQYNSLLQHFNIHQDTLSGMHPCINSIGAFREHSYASICSLNFAEKGSLFTVSGLDTEQTPASIEWIVTSSTFTPAGGLAGNYAITNGNNCLPYLICAYSSHLEIGAGRMVNLIP
Ga0334995_0071075_2202_2375F075700N/AMIVEENLEGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKP
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