Scaffold Ga0334995_0061040

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0061040
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3018
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F044490	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0061040_1494_1652	F006844	AGGAG	MAKWEVEVIFEPTGDYMNFVYETDNEDEDGIFNEISNQLSIVPDLVEKNEEE
Ga0334995_0061040_2115_2345	F044490	GAG	MMRVRVLRASKEEKVAVAIGRLLSDFHLDLEKVGYYLAKALPHTVYRRALEVLASAEFQENEVEQNRIGYRNDRLY
Ga0334995_0061040_923_1483	F007112	AGGAG	VHTLHYVAVEADDKQQAFDKVVVSLSREDGYTPADWSDWHVVGGGRWSTNAQKTNDFMGGYNDDPTDVLGFSEDKEKFQEVLTNVAKFKAEAVNRAIKQINTDRFISDLVDYASEGGRPGNHFDGNKLMNLYTIKEATNMLMGQWVPDSGFYDLHEHIAETTYLKERLDKPEQASLQYLVPVDFHF