NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0059849

Scaffold Ga0334995_0059849


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0059849 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3056
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F009318Metagenome / Metatranscriptome319Y
F035673Metagenome / Metatranscriptome171Y
F065484Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0059849_1380_1928F001345N/AVNAESIVLDLYRSGEIRKACITITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGLSHPD
Ga0334995_0059849_158_349F009318N/AMARLLLLLLLTACTNDRPWRVIEVRAKGNACKYVLSRSNGFGPQIKTLTDSCGAYKLFQTLNL
Ga0334995_0059849_1974_2414F035673GAGMVLRFALCEAEAVFVHDLLRVLAWGCPDPANVPMVLGPYPWACLICHRNNHPGMDLQMTNDQFIVAQKHRKYWDQYVASLTMRLPPDAVGELQSILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITYPLNAPANPEQ
Ga0334995_0059849_3_140F065484N/ALEFKADKGKQSLSQKWWQGVVQEAGYRYEVIRSVEDFQRVVASVE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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