Scaffold Ga0334995_0056762

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0056762
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3158
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F040479	Metagenome	161	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0056762_1393_1608	F040479	GGA	VNPASTTLLAQETLRANQEARLTELLNSLENVVDNLNYKSFTVYDTLTIAMENLRVALSNIATDADGTDTL
Ga0334995_0056762_1692_1997	F055450	GGAGG	MEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKQTDEQEGKTWIDLDGNTIPVVGVRVRTTEGRGAPILKENIHRSTDEGDNGGKA
Ga0334995_0056762_2279_2548	F068766	N/A	MKEEVMTTDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGAQ
Ga0334995_0056762_2523_2699	F023834	AGGAGG	MSEPTVDYWKAKAQLCRDLALTQIQDEETEKEAGMNLMRMTYALSMVDTFNEGGSDDN
Ga0334995_0056762_2837_3136	F026864	N/A	VELHQPKGSNNTNYKEEKMMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLSTGQATNWRTALGEALSKIELPTDKVEKTINDVIKEGEESEG