NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0055250

Scaffold Ga0334995_0055250


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0055250 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3215
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011222Metagenome / Metatranscriptome293N
F018136Metagenome / Metatranscriptome236N
F023103Metagenome211N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0055250_1199_1597F011222GGAMDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENPKGQDASQVYRQMTKEGDELEAKDPEHPICYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0334995_0055250_2561_3214F023103AGGAGMEQMAKFKFESVKFEQIMKDYAEIRAVTIPDAVSLNARLLCVELARRTQPFGEEQPSGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKALIKSGRFDIVETILRNIGFLNKWTGMEVIGASKIKSVHNEARNKTTGRTKSRGSKLFIASVSDQDTYISEVQKRVGMSKGGWANCATQLKRVNKGSLLSNFPKWVIKAMKSGSGSVKDITSDLK
Ga0334995_0055250_323_745F018136GGALTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHSALFAS
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