Scaffold Ga0334995_0049612

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0049612
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3440
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F012455	Metagenome / Metatranscriptome	280	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0049612_1524_1733	F093770	GGAG	MITLKHSVNLVTEIDEHKMPERLLNTFLNLSELEMETLLRETFISALKGEGFLDKLNENNSWATLKVVE
Ga0334995_0049612_252_491	F003393	GAGG	MIDLENDDTIQVMDYVKVDLLNAGQLEIDDCILINDEVVSIVDIISLPDGYTLEIVNDFGEREIVQVGEYDQFDLMMLD
Ga0334995_0049612_2547_2672	F012455	GGA	MIKEIKNKITRIQELRRSNAATAIPNKKKYSRKIKHKNKLQ
Ga0334995_0049612_780_989	F000808	GGAG	MEYNYAITTSYDGELIHTLRVSDMLEAVSAWDKCVDYGTAKEYATYNLSDPLGKMYTKTFFTNGEVVIK