Scaffold Ga0334995_0036711

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0036711
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4145
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y
F031754	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0036711_1532_2032	F031754	AGG	MSEKGGPVIMVFLLLGLFLFCSEPAKEPTQCDLLDSKPLIEEVAKAKDSMILDAAKDAAVSISLARSLAENHIADANKKVDPMPSPSDKPHEKTKREILIFVSKNCPPCEKWKRCEMQRFMDAGWAVGIVEVHSYGLTPTFEIESGEKKVTLKGYTTLEQAAEAVL
Ga0334995_0036711_2992_3234	F029017	GGGGG	MTEIGLITWYIVQLVLWAGPLGVGAFLAVCFFAGYFLGLKVSRLKRSKPMGNVKMDHIKYDILPDGTLGPGDPRGLEDLE
Ga0334995_0036711_3234_3611	F018127	GGAG	MAKKENNWIPWLIVGGLAFYVFNQQPKGGGDSSKPAGVTAVVRSAIPSIRAAYKQAFLDAAAKIEAGEIKDQEQWTKFIADNAGGKNREALDKVYTAIDELKLPVTFAGREAEIARINREISGAW