Scaffold Ga0334995_0034717

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0034717
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4286
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F022400	Metagenome	214	Y
F027758	Metagenome	193	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0034717_1229_1360	F029021	AGGAG	MNICQFCGWEIARPDWYHRYNNKLICDNCVMDTMSEREREQAK
Ga0334995_0034717_21_314	F022400	AGG	MKKIGIESSQKTTLRLVGAGEGESGSASNHFGPLKVGLITMPRTKEDQALTELLNSLERKIADLSIKSCEVLNIFLQDTKHLAEQKVSFSSIDIINE
Ga0334995_0034717_2373_2537	F027758	AGG	MFIDLILISSWVFGFFFLAGAIAWLADRLASFHLEGMERVRKLQAREKEKEGAR
Ga0334995_0034717_598_861	F011646	AGAAGG	MSDVLELRNGSLKRIIFYEVADQQNIAVWGGESAIEALKWYRNSPSGSRIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV