Scaffold Ga0334995_0026789

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0026789
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5022
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F044299	Metagenome	154	Y
F056408	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0026789_2195_2440	F056408	N/A	MDEAEIAVNKRIKQLMAQTLDDKFKETWSTMTPADLERFVKHFAELLIRDCADTAYRFDGVTLGQGYTIAKHIKKNYEVEL
Ga0334995_0026789_2781_3017	F044299	GGAG	MNKVSQYLVSINRPPYVDGRRVGQATPCSSYGQPSWFISFLDGYTHTNDPVFTDEDGLNSATSIREYANNLGYEPCTN
Ga0334995_0026789_3181_3468	F016374	GGAG	MSKGTAMNKEITLTPAGGRFYRAMTFHWVTVAVLMPPLAIAMIAAILNPFWFRDSMFNWVERIVNKFTRWRNNVKYRIYLNCDPVVWHTLKGDLK