Scaffold Ga0334995_0019349

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0019349
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6102
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025681	Metagenome / Metatranscriptome	200	Y
F046257	Metagenome / Metatranscriptome	151	Y
F095174	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0019349_2175_2423	F046257	N/A	MTKNPRKRKVDYDWQAVIDGNRTGITNVIRGIRNGDVDELELEKLNNFVQFSLALMQLSGPTKWAQAKMNAEMMNYIKSINS
Ga0334995_0019349_4919_5530	F025681	N/A	VDPLTILAAAKLAASAIKQGCELYQQAKADGMELVDAYGKAKDVVADISSHLGGFFKAHEQLEKHVHEEELKTKKVRDPELSVNQEAFNRILAQKEMIRLETELRETLVYSAPKELGAIWSEFEVMRDRVKLERAEVQRQELLKQQATIWRRANIKRKIAEQMTLILAVVFIILWFLWVMILIRMSHTFRGQFSLPSLWCVLC
Ga0334995_0019349_69_239	F095174	N/A	MTDEKNILYKKDYVISAKTDIRKTFAKFRKDQKAAEKISTVKETQPNNVVQYKKFR