NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0015965

Scaffold Ga0334995_0015965


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0015965 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6841
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048169Metagenome148N
F056545Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0015965_3239_3520F056545N/AMVILLAAPHCALSQCTDSSTLSANNYYLLKGAEARENLALCIEYRKVDAEVIAQQDKIQAKLLDELQKRDIKYHRLRRTTYAIAAVFLVTLIL
Ga0334995_0015965_3447_3749F048169N/AVSKSNLTILLLVLLVFGGMMYVEFAVPKRERVVHGPAIRIVEKDLDTLYQIRLKYKALHDTQIVINQKYDTLYIALNGDTSCGTTLRLIAMHRQLDSLGK
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