Scaffold Ga0334995_0015043

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0015043
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7083
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F007112	Metagenome	357	Y
F008305	Metagenome / Metatranscriptome	335	Y
F068817	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0015043_2434_3000	F007112	AGGAG	MHTLHYVAVEADSKQQAFDKVVVSLSREDGYSPADWSDWHVVGGGRWSTNANKESENNLMGGYNDDPTDVLGFSEDKEKFQETINGIAKWKAEAVNRAIKSINTDRFISDLVDYASEGGRPGNHFDGNKLMNIYAIKEAADMLMGQWIPDSGFYDLHEHIAETTYLKERLDKPEQAVRQYLVPVDFHF
Ga0334995_0015043_3800_3961	F008305	AGAAGG	MLGYTYKDIQAFGNSLTWAIDTAKIQGDEQNYKQLLIVWDFFEGLLAEGYVAE
Ga0334995_0015043_56_235	F068817	N/A	MSDLDEFMKDPWKKVNEMRKTPHACDYIYSIDPSGTMFFEICKYCFDTNGVVEMNNRED
Ga0334995_0015043_6451_6621	F000684	AGGA	MTLGGYTYQIGDLFTTSRTGVTGRIVKFSPINSKTTRVSLQLANGARRLAMVSTTK