Scaffold Ga0334995_0014648

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0014648
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7191
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F009266	Metagenome / Metatranscriptome	320	Y
F066782	Metagenome	126	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0014648_1756_2106	F066782	GGA	MNEENLKKLGYYNIALEMLLKREAQINTDGLEILDRVPILNKDPSLNDLSSDVKSDVRNILNKLEEVKELLNNLPEYTVAEEEYDEDVRSFPMHKRYAKDELENLIEEIKQLQRYA
Ga0334995_0014648_4604_4843	F006182	GAG	MKINFNVTGTMEIPDDAIKHYDAAGKLYALEFNDIMYMLQVCIVAEAGAGGWEILHQYEEMQNHSITNVRYKDAEFSED
Ga0334995_0014648_4833_5054	F105155	AGGA	VKISAAKKLAAEIKYLEWDLVSFNFYHKTYKGYNFYKRNISLNYWQYTVTNDITHCTFKVYEKEANNAKLGNE
Ga0334995_0014648_5949_6143	F002406	GAG	MENIKWIRAMSDRLRDELSSEYDDDTKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDDKE
Ga0334995_0014648_6340_6594	F002398	AGG	MLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDYPRVNIIEKSKFDFFAYLDTIGIEHTQVGSYYFFNRKPK
Ga0334995_0014648_6591_6902	F009266	AGGA	MTDKERKILDKEIQYLCEQQDRVKAIREYTNINPGYTFQREAETIESLYKSVLEHRKHDKSMYFSAATSGWYVVYLRDKKKYKEGEKFRIKIYHTFVWSDNLE