Scaffold Ga0334995_0011831

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0011831
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8136
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F033005	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0011831_4585_5115	F001872	N/A	VAVAKAKPGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDMSYRKSEKNPKAGRKEALVFIEKLVANANDLGLQCILDYFPEPQGRAWRCDRYAWQKYDKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPLKA
Ga0334995_0011831_6120_6518	F002421	GGAG	MKTCTICKEIIAYPDIQGKTHFVCDGRVPARKQAPFIQGMLASQSSADARWTKIEQNQVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0334995_0011831_7853_8134	F033005	N/A	MTRKLTEHDTAIYKQARAELLRDQPLCHWCKRNTATELDHLVESDKGGTIEDGYVAACKPCNSARGATYRNRKLANAKQNREKAINDFLYSNQM