Scaffold Ga0334995_0011232

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0011232
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8375
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018918	Metagenome	232	N
F068473	Metagenome	124	N
F084137	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0011232_68_595	F068473	AGG	MIAKAKPGVVGARDYLGNSDGLAPAKRPGTEEWVRQAAKYSSGALWNNGTYGQRDVRSKPGTLSVHATGRAMDLSYRKMDTKGVATGRNTSKQFIDKVVANANQLGVQMIIDYWPQPFGRAWRCDRQAWKAYETKTVSGAPGGDWWHIEIAPGMADNPEAVKAAFQAVFEVSTTA
Ga0334995_0011232_7118_7309	F084137	AGGCGG	MYYIIKSARLGEVGTEYEPKPGTNIPALLWGGFIAEINDQQPDEVSTPAPKKGAKNKKATKES
Ga0334995_0011232_7681_8313	F018918	AGG	MAAYSVTQKYIVDNYAVVVLLTNADPLEVGQSFTLAGVDATFNGTYTVHTLPPFRFMGVDEYGFFIYDPEQPIQHQVLFAKTAADVIISPATGTLTTTPTCTWITADSQVEDWLGIGTATVADQTFITQCRLASNEFSFRRRQEAGYKDSLTTVPNASVLLGAIAYAGFLYRQRGAVTDFAGFDGLAAGGSMGLSPMIKQLLGIDRPAVF