Scaffold Ga0334995_0010732

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0010732
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8600
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F035667	Metagenome	171	N
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0010732_3024_3581	F008495	N/A	MAEYHGLFAMVDYCRPIYPQNDHSGFHRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVIAAAHQVANGRPVLCAGKAAHGMAEFETIEYMCAYIRDANEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRVERKF
Ga0334995_0010732_5610_5846	F046247	N/A	MIILPNENGWSFDESNSWKLVYDGSTIIFYDETEKAISTQSVLFVGTKDECEAEIARLGLVDVSAQGNDNGLDIHADA
Ga0334995_0010732_7107_7502	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEVFSGNMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIENNMIHHLEISAMTDAMNAAFELYNASATQSKEGSGSGN
Ga0334995_0010732_7601_7750	F035667	N/A	LQLLQADDYANGIHRPWSRNNASVDVDALATIEDTLAKYGKIQIRELEI