NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0010655

Scaffold Ga0334995_0010655


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0010655 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8638
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090060Metagenome / Metatranscriptome108Y
F102573Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0010655_2428_3096F102573N/AMYDLKFELIRPTYRDIQISKPLPEDVAEHVLLNYTCHVDHEGFDLNEIEQEYYKHNGVSLEHDTTWYKDGEASNGAHAIILPWFTQTEQSSLILDHSQFVFRHPIVGDAAEQIKRYAKQRPELLRILSAEFKCGLDLCIDYITEDRVYPVVHIEWDYLHVSEMLPDIDYVENVLQNVDWNHIIPTVMRFNYMSKNNLDAFQQADFRSMLLFGRKSYKLIPTL
Ga0334995_0010655_4092_4478F090060N/AMGKKSAHSGESPKDRSTNLMDKFISKNANREKHQPKLPGRRKDPSVPIDLWPLKDQIEYWETRTDADRFNEQYAAYSTWYDEVKNKSGLYHATFLDFTSKLKTEMKQMWETKVFPKDALFELRKKGVY
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