Scaffold Ga0334995

Basic Information
Taxon OID	3300034062 Open in IMG/M
Scaffold ID	Ga0334995_0010005 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034062 Open in IMG/M

Scaffold ID

Ga0334995_0010005 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8961
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8961

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008811	Metagenome / Metatranscriptome	327	N
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0010005_2493_3725	F023328	N/A	MTVYTPTYRVTIAGTVETSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPTVELLDTILIEVTDSTGAYVKLFTGEVSSVHNRFAGAGLGGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYTAWEDLSNTLTWDDIPVTETWANYGVQGIDTIDAGRYEMLARSAQVEQAYNLTDVTQQSGLGYLYDTTDFKIGYADAERRSENYAANLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVEAQNDTSINNYGLLQEVRSTILAETADATEQATNFVNYRGTPKASLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYFEGFCEGWTWTLGRNNLELTMSVSNSIYSTLSIQWEDYNAVIQWQNLANDYRWLDVI
Ga0334995_0010005_3_347	F008811	N/A	EQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDVEFLNDAGATPNSLYQVLWNGTETAADTTIAFIMTLRTGVTLTGLVLPQYPSITGSGADVQTCSVSLQVVGIPTEDLTA
Ga0334995_0010005_4576_4737	F028786	N/A	MQSFNYKQVSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKTK
Ga0334995_0010005_5119_5418	F018353	AGG	MSKPKAKKTVIELPDVMASELVRIINTTHEEGKLITGFVCCLEMFDGKKKTIKIAANQDMPQHSVFGIINYAAEKYQFTVAPDEDEDDDFYDPNWFDGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334995_0010005

Overview

Ecosystem & Geography

Associated Families

Sequences