Scaffold Ga0334995_0004925

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0004925
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13386
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F035281	Metagenome / Metatranscriptome	172	Y
F059898	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0004925_11085_11300	F035281	AGGAG	MKNFILMIAIATACSTTFAGECANGTCTLRNRVVNVTREIVSVPVQVTKRTVEATRNFGRRSVARVRSVVR
Ga0334995_0004925_2969_3673	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPNTCAFLHNGCYAEQTEKMYPGVRPAGMKNVITEKHRIRSMILDAIRQGKSIRWHERGDWFLNGELDLDYVANVTDACESILADGTKLPDMWFYTHIYDSRLVSLEKYMNVYASIHNDQDMGEALAQGFKLFAWCDSDQKIAPKRPRNKAKADAWRASLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKGSVTCDLCVRGLANVLFPSH
Ga0334995_0004925_682_849	F059898	GGAGG	MNRDQAMVYIINFFNSRMSAMSKNNVDKAKELIGLHEISAPELINKYVELVYENS