Scaffold Ga0334995_0004818

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0004818
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13537
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F043366	Metagenome	156	Y
F045060	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0004818_10205_10567	F045060	GGAGG	MRYDEWAAIGHANGWLGVRTEDPATSRRGAASLAVRAGSQRALLLERYAAGSMTDEEAGYQSGLASRPRCCYWKRCSELRQAGHIRPTGAERMSSAGVPQQVCEITEDGRRTLDALAAAR
Ga0334995_0004818_453_683	F000888	AGG	MTAQYFAQLDDNNVVTNVAVVTAEFMAENPDRYSGRWVETFFDTAGKTYAGVGFTYNEDTEDFEAPVAPELPTDPE
Ga0334995_0004818_5139_5414	F043366	GGAG	MTQTNKTIVLVQWADTHMSDAGWLDLEKYEDDGEMLVDTVGFLIPVGEPGSKDQHVTVWQTLCKGEGIHAIHIPVGMVRDIKVLDTTSLHP