Scaffold Ga0334995_0004007

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0004007
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14946
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F013987	Metagenome	266	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0004007_10647_10946	F018353	AGG	MSKPKAKKQTIELPDVMALELVRIINTAHEDGKLITGFVAILEMFDGKKKTIKITSNADMPQHWVFGIINFAAEKYQFTIAPDEDDDDDFYDPNWFDGQ
Ga0334995_0004007_10943_11164	F014609	N/A	MINELVGIIGLLLTVLVLVIKATSEISKMKSQLFPNGGSSLADKVTRLQLDVVKIRSTIDSISTELGKPKRKR
Ga0334995_0004007_58_384	F013987	AGG	MGLREEKQRILPALDRATEEAKRQGIITELDLAGLSALFVIAGVLDSGMLKPMEEIKYLSQLQSGLDKYGLSLFGRKEKPELEAGEDPLDDLRKLTPENSDHSTDSPN
Ga0334995_0004007_8005_9237	F023328	AGG	MTVYTPTYRVTIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVELLDTIIIEVTDSTGAYVKLFTGEVSGVYNRFAGAGAAGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYIAWEDLSNTLTWNDIPVTETWANYGVQGIDTIDAGRYEVLARPAEIDQAYNLTDTTQQSGLGYLYDTTDFKIGYADAERRSENYAANFIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINNYGLLEEVRSTILAQTTDATEQATNFVNYRGTPKASLEEVTVNLANSNMTNTVRDNLLGVSMDSLLYLDNIPVGLIPEGSFEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNSSIQWQNLANDYRWLDVI
Ga0334995_0004007_9890_10117	F001805	GGAG	MAKSKEEQIFIGIDDQIIELTGADKEAFIAQREADNAAQALLEAEYKAKQDARDSAIKKLGEIAGLTKEELDAIL