NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0003056

Scaffold Ga0334995_0003056


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0003056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17255
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023103Metagenome211N
F034182Metagenome / Metatranscriptome175Y
F046247Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0003056_2421_3182F023103GAGMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGNDETAGTTRVKNDIGKIIKPPVQLLAMANKVENKKIGKRLKSLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSAIKTHHQDARVNPTGRTKTKGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPPWVKKATRSGSGNVYDLTGNKKNPMVLITNNVPWVSQILPVSEQLNALSVVATKMRNQMNMILKKRQKTLLET
Ga0334995_0003056_281_532F046247N/AMIIQPNEQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVSAQGNDNGLDLHADAGEGAY
Ga0334995_0003056_9646_9813F034182AGGCGGMNGHAFHTFVGTSAPATAVLISFSEAEAWLRLTSLILGICIGAVSLYKMLKAKKP
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