Scaffold Ga0334995_0002614

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0002614
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18751
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056554	Metagenome / Metatranscriptome	137	Y
F070923	Metagenome	122	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0002614_16894_17256	F098561	AGGA	MAITLGKDCSIMLDGGYIFSARNVTLTESARTIDVNPYGSRYAGVYSTGYECSVSVELNDAADLGTAFERMHTGGTFTVSGGAGGFSFLAVMTGISETDPIDGVATFTLEGRMTDPRLAR
Ga0334995_0002614_17257_17586	F056554	N/A	MAITLGKDGSGIPQVSGAAIEGVISATFTQECETVDVSNRSNVGGSAGAPGRRVARAGFVTKTWEIECHDADGLLTSLNAAGTSYSVMSVSESISVDGAVIFSVTLKEF
Ga0334995_0002614_4457_4849	F102439	N/A	MGEVQRSLLGDDELPPAKGKKRRMPERLSPQLRKWLTQLARVGARITWTIELLYDPRKGGQGELCDRAKAGDHTLVLDTVREVEHRAASLAEDIEVFMTPPDKLPSEPGSKARVEAMARRQLAKMHLFDG
Ga0334995_0002614_4871_5323	F070923	N/A	VQVQSPDRRVVHACFTCSACGREVTVDDAPAGMLPHLRSRLRAEVGPRAVAAGRAFDEFVDSVCRCWNAEHWTKLARSQPESEMAAVRDAKVLIAKVREDVEAMWGDSPELQKLYGDVGTDAVESFARLWFESMANRTWMRAACREARKT