Scaffold Ga0334995_0002279

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0002279
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20159
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032194	Metagenome / Metatranscriptome	180	N
F046894	Metagenome	150	N
F060717	Metagenome / Metatranscriptome	132	N
F073146	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0002279_1528_1725	F060717	AGG	VKLADEQPDNVCFDCGEQWGLKPLKNGESHRIWIDQCDVCSRLTAVADSSEYGYMKEGWDGKKVV
Ga0334995_0002279_2197_2403	F032194	GAG	MEAFYKTLKEVDIPTGQSMVCEHFFACGWDAAIDALSQAYQRQFEEDGVNTQLIRREPQEPPPDDDQE
Ga0334995_0002279_2586_2756	F073146	N/A	MQNEPVSQAVMIITETEPCRFSVEIEGSETSLEVAQIMVKFLSDCLEQIHRETKVH
Ga0334995_0002279_718_1005	F046894	GGGGG	MNKYDYWLESGADQGCLTDQQDYIWTTHMQPGKPCDPMDLDNFQEYLAEATASYAGFEKWENFRQYADRGEWEKFGRAVYYLVHDHIENKLLGEE