NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0002200

Scaffold Ga0334995_0002200


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0002200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20518
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (25.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015974Metagenome / Metatranscriptome250N
F063698Metagenome / Metatranscriptome129N
F071026Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0002200_11425_11895F015974GAGMNTLAIVKDWSMDKVESMPIDELTNELKKLEFLNTLPTDKVRFSFRHRGRRWKLAKTTNEICGHHFIELQQVFNGDMIESLHKVMALLTYEVDLLGRTKKVTDAQAHYQEKCELFLSLPVTTAYSYAVFFSAVYPKLLETILTYLKEEMNQLKQEA
Ga0334995_0002200_1384_1644F063698N/AMSNSTSIIAGGDGFKYHSASTVTGVGYSALVVQENTVFTSFSVDGVNVLLSRGMTSITFVQGAYLPAGGSSKITGFVISAGSVIGY
Ga0334995_0002200_9690_10889F071026N/AMQYVHIGVQLLCIWDAYLEPLFSIVALSITQQPNEYAPAYNDTNFVITESSGGIYTKDNFKFIAEVKQNTTSLAKLKAPIYYGSTNKGVFNIGRILENYVTYDWNFNDSAASGCTNSIMDYKVEFGYEYSASATGSVTEYTNLTSATGSVWNAALNPIDLVNYAGQYTMDGNGLFLTPIRSKTIHRTQKDWLYAIRNTATTALVTYSDASTQTINLPSTKVVRIPSGSQLTIPGAATYYDIQLKLGGTVLSETYRVNLIEECSKYDTTDLFFLNSLGGFDSFRFNRVRRDNYDIQRKQFKSNPYTLGATYGYTTSAFKQKTYDTNMTHKVKMFSNWITEEQSEWLLDLLSSPVVYAYDGTLVAVNIDTNTYEVKKHIQDNAFLIELDLSYSFESKRQRQ
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