Scaffold Ga0334995_0002195

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0002195
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20546
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024955	Metagenome	203	Y
F038086	Metagenome	166	N
F074801	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0002195_556_720	F074801	AGGA	MAFLDNFEEFLFLEEAGNGEIIQDELPIELEERLSIEQIEKYNERLKYMEENGI
Ga0334995_0002195_5954_6433	F024955	GAGG	MAVENIGNLVPTKIPALIDNANIQDALKAYHYGSYDFDTAEDDPENLLNPSIAYTINDLQDQIDTKAALEVAARDISRATTTAPTAAAFTAFSNTIPNGYIWLDKDSSAGVGYFAATSVYTATAPSTNLANGLIWIKKGSTPIEMYVYNADTSSFDQVV
Ga0334995_0002195_9248_9589	F038086	AGGAG	MATTTISNISNPVSIQDIKSIKTLSNIKPFNSTASNAALGAVLAIATLTNTVAVSDLKPITSNFQKVDYAKIITPSSVLPFRLTLTNIGIEGYDPANPPGIGIQIIGFSNYIL