Scaffold Ga0334995_0001908

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0001908
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22081
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021474	Metagenome	218	Y
F089831	Metagenome	108	Y
F104432	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0001908_10096_10389	F104432	GAGG	MVLEPGHLITLGLAGVAVIIWLVRLEGRVNGKATTDQVAAVSAQIGTTAAVVANLQAKDASHDNTRDEVIRLQEQIKHLTDLIERLLPLPTRRKASA
Ga0334995_0001908_6215_6412	F021474	GGAG	MIDRATHTDHRRHAAMMTDHGSSRGWDFRPSDEPPMWLRAVAEVLRPRSLIILAAMAGVIALWWF
Ga0334995_0001908_7601_7780	F089831	AGG	MRLEPFSLLLGIAAARALNRKASAKRARWAAHIGRPFPRSVTDLRPDPGTLDDADIELR