Scaffold Ga0334995_0000173

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0000173
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67035
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (88.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024291	Metagenome / Metatranscriptome	206	Y
F047555	Metagenome	149	Y
F081247	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0000173_13714_13998	F081247	AGGAGG	VDQVNEDELYGAGFPLVDKLKLLAEWAPLLARLQAVAGAETPHERAVSLVKTLQWAAGKSMTEVDDEVLSHIEAILKTPEGKSFFDWVVAQVSE
Ga0334995_0000173_53432_53767	F024291	AGGAGG	MAGVSSQGLTFTFAGTTLTVTSVQVNDTQDLIDGSHLGIAPNGRREFVGGFATEREVTIDYISNSILTAGVSGALSIAGPFSFSGNATMASSSLGGSVGALVSGSATFRVA
Ga0334995_0000173_55767_56255	F047555	GGCGG	MTVTAQITGNVSARRSTTRGLTTAIDQHPFTFTVDAGDCTKVWSDRRTFGVAGFDEVDFSTIGLGVVKVLCIKNLSTTNQIALSAGWTGSAFSIFRQDVTSWNFSPMINLGSLTLRGYPIREGGSMMLSCPNSDGFGTTVGGSILRIGGTSGQSYEIYVMGT