Scaffold Ga0334987_0223563

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0223563
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0223563_1056_1280	F081291	N/A	MASLTSLTICVSWRPNNVKRIDYWKAKLKAAQAEERIRQKELNQMAKAFERALEQVDDIQKRIEDEKAKLARTE
Ga0334987_0223563_109_297	F102853	AGG	MKELVLIYYAAIVVATVGFLAFFVPEPRRPTAAECGVSEIAPDMSTRDREVCRQLRQHRHRM
Ga0334987_0223563_294_476	F044373	AGGAGG	MLRDGYFIREEPPKIGAHYIPQFYQRVSTPEERFVQDIMLGAKPQQESPVVKLFGRLLSI
Ga0334987_0223563_466_702	F037206	N/A	MQCGSKTHVVNTIQQPGGVRRQRRCPSCKNNAYSAEVWVAGNVMVGKSIYTNDEVALIKKKGVDARRANEDRRNDNVT