Scaffold Ga0334987_0141519

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0141519
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1775
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F040586	Metagenome	161	N
F041187	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0141519_1220_1747	F000220	N/A	MAVFAFSGYFIWQNQAFLFEAYKENRKLPAIAEDRAEDVAAHLFKNTNATVVAIFKVNPLFGTRILYRAYTREGRERTHEGLDVGLFTQSSANNRDVVALMANEIPCSEYNVPQSEIGLWYIDKGVKFGCRVSVPPEQGRFVGQITVGWDKEPKDLTKAMGMLQIASNMLSKSKQ
Ga0334987_0141519_13_138	F040586	N/A	MILQELGGAEWLRNILDKKAKMPAKYYRRELDAPSKKEVND
Ga0334987_0141519_131_298	F041187	AGAAGG	MTNRPNFATWSQANLAKFAEEAYAKLCEQDDRIQQLQCDLKTAITAYEKLLSGNA