Scaffold Ga0334987_0135480

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0135480
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1828
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F081254	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0135480_1096_1392	F028146	N/A	MNETNEIKKAAVIAAAAEQVRSLLETHYDAMRKSAEESFVDDDTQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESEAVVDPLQSKLDIGGAE
Ga0334987_0135480_3_374	F081254	N/A	RASRGLLANKPAAPAAASAPAPAGAPKDIPQPSELVADPGSVEVHFGKNKGTPLRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQIVHGNRGTLAAGSKITLVTETLTEEVPF