Scaffold Ga0334987_0129771

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0129771
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1882
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F053128	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0129771_1009_1191	F011756	AGGAG	MSEPRYLFGDDYAYNGGYEELINCDTCAVEFDRVEYKSDTCVNCENERVKREKARASANN
Ga0334987_0129771_1407_1547	F006842	GGA	MKATPAICGDHLVPISECNCLDYMREIASSAERLVQLTKEREELIK
Ga0334987_0129771_1544_1786	F053128	AGGAGG	MKGYFVIDRQDTGWKEGYLWKSIKEIADSIRDYDDYRELEISNLTHSQVCDLWDFEYHRLTPANCNKYGVRPSELTREYL
Ga0334987_0129771_357_578	F018703	AGGTGG	MSVIEKRIEGAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMNADENMGKKWLDIAGNTKSRRFRRR