NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0097297

Scaffold Ga0334987_0097297


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0097297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2274
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034467Metagenome174Y
F080867Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0097297_1142_1327F034467N/AMLEKENEMKELKYSSKAIPLRGCNDPKFKWVSAAQTDIRRTFRKARLLIRITKGAAYESR
Ga0334987_0097297_1331_2197F080867AGGAGMNTLSFSNVVMGEELKKSFDKEGLRMKGVYGMLDPVVSRLASLNPLWTFVIVSSTHDSGYDRVASGFTVKLDGEELGQISLSYMGSKGRVITISNDRIGKGRTRSDSYRTTDADKAVLTAKKMFGKMNPTERIAKAKDAAERVVTRASWNKERERGNLKGTVQSAILKWAETNGYEMFLEFIEKEAVLSTKKSVTQSLQKLEVLDTEMKTIERVQEEFGRNQTALVVKDSGKYLVKIGDKVDLYDDNTLPQDMRMKVGMLKLVEDEQYLTDVGCKVTSEIFVLLVDET
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